PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26527s0175.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 24117 Da    PI: 9.4094
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26527s0175.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.91.7e-25958150
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                          krien  nr vtfskRrng+ KKA+E+ vLCda+va+iif+s+gk+ +y+
  Bostr.26527s0175.1.p  9 KRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMTDYC 58
                          79*********************************************997 PP

2K-box80.93e-2771169199
                 K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                           yqk sgk+l++ak+e+l++e++++kke+++Lq e+Rhl+Ged++sL+lk+L+ +e+++e++l k+R++++e+l+++ ++ ++ ++e+++
  Bostr.26527s0175.1.p  71 YQKLSGKKLWDAKHENLSNEIDRIKKENDSLQLELRHLKGEDIQSLNLKNLMAVEHAIEHGLDKVRDHQMEYLMTKRRNEKMVMEENRQ 159
                           899************************************************************************************** PP

                 K-box  90 enkaLrkkle 99 
                            n +L+++ +
  Bostr.26527s0175.1.p 160 LNFQLQQQEM 169
                           ******9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.375161IPR002100Transcription factor, MADS-box
SMARTSM004326.6E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-34296IPR002100Transcription factor, MADS-box
CDDcd002657.01E-38280No hitNo description
PRINTSPR004044.7E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.7E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-263859IPR002100Transcription factor, MADS-box
PfamPF014866.6E-1782164IPR002487Transcription factor, K-box
PROSITE profilePS5129714.18984170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGRGKIEIKR IENANNRVVT FSKRRNGLVK KAKEITVLCD AKVALIIFAS NGKMTDYCCP  60
SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDRIKKENDS LQLELRHLKG EDIQSLNLKN  120
LMAVEHAIEH GLDKVRDHQM EYLMTKRRNE KMVMEENRQL NFQLQQQEMA IASSARGMMM  180
RDHDGQFGYR VQPIQPNLQE KIMSLVID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3p57_J8e-16289180Myocyte-specific enhancer factor 2A
3p57_I8e-16289180Myocyte-specific enhancer factor 2A
3p57_D8e-16289180Myocyte-specific enhancer factor 2A
3p57_C8e-16289180Myocyte-specific enhancer factor 2A
3p57_B8e-16289180Myocyte-specific enhancer factor 2A
3p57_A8e-16289180Myocyte-specific enhancer factor 2A
3kov_J8e-16289180Myocyte-specific enhancer factor 2A
3kov_I8e-16289180Myocyte-specific enhancer factor 2A
3kov_B8e-16289180Myocyte-specific enhancer factor 2A
3kov_A8e-16289180Myocyte-specific enhancer factor 2A
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9679610.0KC967961.1 Brassica oleracea var. viridis PI.a (PI.a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131786.11e-150PREDICTED: floral homeotic protein PISTILLATA
RefseqXP_013626307.11e-150PREDICTED: floral homeotic protein PISTILLATA
RefseqXP_013730998.11e-150PREDICTED: floral homeotic protein PISTILLATA
RefseqXP_013731005.11e-150PREDICTED: floral homeotic protein PISTILLATA
RefseqXP_013740244.11e-150PREDICTED: floral homeotic protein PISTILLATA
SwissprotP480071e-148PIST_ARATH; Floral homeotic protein PISTILLATA
TrEMBLA0A0D3B2281e-150A0A0D3B228_BRAOL; Uncharacterized protein
TrEMBLS5YL221e-150S5YL22_BRAOV; PI.b
STRINGAT5G20240.11e-146(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53002751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-149MIKC_MADS family protein